PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.5G100700.1.p
Common NamePRUPE_ppa002762mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family bHLH
Protein Properties Length: 642aa    MW: 71573 Da    PI: 6.0909
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.5G100700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH45.71.2e-14442488455
                         HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                         +h   ErrRR+++N++f  L++++P+ +      K +K++iL  A+eY+k+L+
  Prupe.5G100700.1.p 442 NHALSERRRREKLNERFCVLKSMVPSiS------KDDKVSILDDAIEYLKDLE 488
                         7999**********************66......****************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142158.0E-5715198IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.514438487IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.18E-17440499IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.29E-14441492No hitNo description
PfamPF000103.8E-12442488IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.5E-18442499IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-13444493IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009957Biological Processepidermal cell fate specification
GO:0010091Biological Processtrichome branching
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 642 aa     Download sequence    Send to blast
MATRLQNQDR VPENLRKQLA LAVRSIEWSY AIFWSISARQ PGVLEWGDGY YNGDIKTRKT  60
VQAIELNADQ MGLQRSEQLR ELYESLSAGE ASPQARRPSA SLSPEDLADT EWYYLVCMSF  120
VFNVGQGLPG RTLANGQPIW LCNAHYADSK VFTRSLLAKS ASIQTVVCFP FLGGVIELGV  180
TELVMEDPDL IQHVKTSFLE VPYPIASKKT NPSVGSTRND NDLACTVLDH DVMDAKLIPV  240
VGCEEMNATS PNNSSNGLGL NQPADDSFMV EGMNGGASQV QSWQFMDDEF SNFVHHSMDS  300
SDCISQTLVY PEKVPLGPKA EKASDHCLHD LKERNSTKLT SLGPQGTDLQ YQSVLSALLK  360
GSHQLILGPN FQNCHQESNF VSWKRGGFVK CRKQRGGSPQ KLLKQILFEV PRMHVDCVLE  420
SPEDNSNRNG VWRPEADEIG MNHALSERRR REKLNERFCV LKSMVPSISK DDKVSILDDA  480
IEYLKDLEKR VEELESCREP SDLEAKIKRK IQDTIERTSD NCCNTKISNG KKPLVYKRKA  540
SDIDETEPEI SYVVSKHGSS DNITVNMNKK DVLIEMKFPW REGVLLEIMD ATSRLQLDTH  600
SVQSSTADGI LSVTIKSRFK GSTVASAGTI QQALQRIARS C*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A7e-1971985192Transcription factor MYC3
4rqw_B7e-1971985192Transcription factor MYC3
4rs9_A7e-1971985192Transcription factor MYC3
4yz6_A7e-1971985192Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1446451ERRRRE
2447452RRRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP6894040.0KP689404.1 Prunus pseudocerasus isolate Unigene15653 bHLH transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007209040.10.0hypothetical protein PRUPE_ppa002762mg
SwissprotQ9FN690.0GL3_ARATH; Transcription factor GLABRA 3
TrEMBLM5W9510.0M5W951_PRUPE; Uncharacterized protein
STRINGPOPTR_0001s09450.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24443463
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41315.10.0bHLH family protein